STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0178TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase. (521 aa)    
Predicted Functional Partners:
Krad_1610
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ace:Acel_0620 diguanylate cyclase.
  
  
 
0.929
Krad_0179
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: tbd:Tbd_1061 putative diguanylate phosphodiesterase (EAL domain) with GAF sensor.
 
    0.907
Krad_0639
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_1490 diguanylate cyclase/phosphodiesterase.
  
    0.778
Krad_0177
Hypothetical protein.
       0.773
Krad_0606
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.755
Krad_0326
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
  
    0.710
Krad_4462
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: azo:azo1357 EAL/GGDEF/PAS/PAC-domain containing signalling protein.
  
   0.699
Krad_1803
PFAM: EAL domain protein; KEGG: ace:Acel_0529 diguanylate phosphodiesterase.
  
    0.694
Krad_2441
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: fal:FRAAL5844 hypothetical protein; putative signal peptide.
  
    0.648
Krad_0176
PFAM: FAD dependent oxidoreductase; KEGG: rle:pRL120735 putative D-amino acid oxidase.
       0.634
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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