STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0179Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: tbd:Tbd_1061 putative diguanylate phosphodiesterase (EAL domain) with GAF sensor. (750 aa)    
Predicted Functional Partners:
Krad_0178
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase.
 
    0.907
Krad_1982
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; periplasmic binding protein/LacI transcriptional regulator; KEGG: pca:Pcar_2499 FOG: GGDEF domain containing protein.
 
 
 0.845
Krad_4323
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: fal:FRAAL6490 hypothetical protein.
 
 
0.816
Krad_0036
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RSc0510 probable transmembrane protein.
 
    0.804
Krad_4300
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_4205 7TM domain sensor diguanylate cyclase.
 
    0.804
Krad_0207
Protein serine phosphatase with GAF(s) sensor(s); PFAM: GAF domain protein; ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV4394 magnesium or manganese-dependent protein phosphatase.
  
 
 0.802
Krad_2950
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase.
    0.800
Krad_4159
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase.
 
    0.800
Krad_2439
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; periplasmic binding protein/LacI transcriptional regulator; KEGG: cvi:CV0046 PleD gene product.
 
  
 0.789
Krad_0606
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.776
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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