STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0194TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB2818 C4-dicarboxylate transport system C4-dicarboxylate-binding protein. (349 aa)    
Predicted Functional Partners:
Krad_0196
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB2816 C4-dicarboxylate transport system permease large protein.
  
 0.991
Krad_0195
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: cef:CE2240 putative C4-dicarboxylate permease small protein.
 
  
 0.983
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.815
Krad_0198
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mta:Moth_0417 transcriptional regulator, IclR family.
 
   
 0.677
Krad_0193
KEGG: pat:Patl_2353 hypothetical protein.
 
    0.596
Krad_0202
PFAM: PfkB domain protein; KEGG: pac:PPA0370 carbohydrate kinase, PfkB family.
 
   
 0.460
Krad_0199
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO3478 dehydrogenase.
       0.438
Krad_0587
PFAM: Glucuronate isomerase; KEGG: rsp:RSP_0488 uronate isomerase.
 
  
 0.422
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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