STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0219PFAM: glycoside hydrolase 15-related; KEGG: rxy:Rxyl_2413 glycoside hydrolase 15-related. (402 aa)    
Predicted Functional Partners:
Krad_0242
KEGG: tfu:Tfu_0334 hypothetical protein.
 
     0.628
Krad_1036
KEGG: pac:PPA0050 hypothetical protein.
  
     0.603
Krad_3144
KEGG: tfu:Tfu_2028 hypothetical protein.
  
     0.551
Krad_0220
PFAM: GCN5-related N-acetyltransferase; KEGG: cgb:cg1612 acetyltransferase.
       0.529
Krad_1878
KEGG: tfu:Tfu_1772 hypothetical protein.
  
     0.524
Krad_0170
PFAM: glycosyl transferase family 2; KEGG: tfu:Tfu_3054 glycosyltransferase involved in cell wall biogenesis.
  
     0.517
Krad_3143
PFAM: virulence factor MVIN family protein; KEGG: tfu:Tfu_2027 similar to uncharacterized membrane protein putative virulence factor.
 
     0.517
Krad_3725
PFAM: luciferase family protein; KEGG: sco:SCO5024 oxidoreductase.
 
     0.517
Krad_3145
KEGG: rha:RHA1_ro00932 hypothetical protein.
  
     0.481
Krad_3172
KEGG: art:Arth_1474 hypothetical protein.
  
     0.479
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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