STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0238PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx25025 ABC transporter, ATP-binding protein. (268 aa)    
Predicted Functional Partners:
Krad_0237
PFAM: ABC-3 protein; KEGG: art:Arth_2639 ABC-3 protein.
 
 0.999
Krad_0239
PFAM: periplasmic solute binding protein; KEGG: lxx:Lxx25040 ABC transporter, solute binding protein.
  
 0.993
Krad_3749
PFAM: periplasmic solute binding protein; KEGG: nca:Noca_1937 periplasmic solute binding protein.
  
  
 0.831
Krad_3370
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro01222 Fe(3+) uptake regulation protein; Belongs to the Fur family.
  
  
 0.633
Krad_0240
PFAM: amino acid permease-associated region; KEGG: mkm:Mkms_5270 amino acid permease-associated region.
       0.527
Krad_3748
KEGG: art:Arth_4108 putative secreted protein.
  
  
 0.493
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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