STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0261PFAM: aldo/keto reductase; KEGG: sma:SAV4117 oxidoreductase. (314 aa)    
Predicted Functional Partners:
Krad_0262
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2026 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.694
Krad_0259
KEGG: ace:Acel_2102 hypothetical protein.
       0.572
Krad_0260
PFAM: phosphoesterase PA-phosphatase related; KEGG: mva:Mvan_5447 phosphoesterase, PA-phosphatase related.
       0.572
Krad_0263
PFAM: stress protein; SMART: von Willebrand factor type A; KEGG: sco:SCO3939 hypothetical protein.
       0.500
Krad_0984
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: aau:AAur_0083 oxidoreductase family, NAD-binding Rossmann fold domain protein.
 
 
    0.475
Krad_0258
KEGG: art:Arth_0684 hypothetical protein.
       0.435
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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