STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0283TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1060 diguanylate cyclase. (391 aa)    
Predicted Functional Partners:
Krad_4158
Diguanylate phosphodiesterase; PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    0.852
Krad_3036
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4020 putative two component system response regulator.
 
 
    0.839
Krad_2010
Diguanylate phosphodiesterase; PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    0.827
Krad_1983
Diguanylate phosphodiesterase; PFAM: EAL domain protein; GAF domain protein; KEGG: ace:Acel_1420 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    0.818
Krad_1986
PFAM: GAF domain protein; Stage II sporulation E family protein; Phytochrome central region domain protein; PAS fold-2 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: fal:FRAAL5334 putative bacteriophytochrome (phytochrome-like protein).
 
  
 0.809
Krad_0326
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
 
    0.777
Krad_0573
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
 
 
 0.741
Krad_1803
PFAM: EAL domain protein; KEGG: ace:Acel_0529 diguanylate phosphodiesterase.
 
    0.716
Krad_2441
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: fal:FRAAL5844 hypothetical protein; putative signal peptide.
 
    0.677
Krad_0356
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein.
 
    0.632
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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