STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0288PFAM: cobalamin synthesis CobW domain protein; KEGG: sco:SCO3426 hypothetical protein. (603 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: nfa:nfa49750 putative ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
  
 0.919
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.907
rpmG2
PFAM: ribosomal protein L33; KEGG: lxx:Lxx24990 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.848
Krad_0291
PFAM: major facilitator superfamily MFS_1; KEGG: cdi:DIP0323 putative ABC transport system membrane protein.
 
     0.804
rpmJ1
KEGG: cdi:DIP1872 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
 
  
 0.781
Krad_0290
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mul:MUL_2616 metal cation-transporting p-type ATPase C CtpC.
  
  
 0.779
Krad_0289
KEGG: msm:MSMEG_6059 hypothetical protein.
       0.773
rpmG1
PFAM: ribosomal protein L33; KEGG: lxx:Lxx24990 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.674
Krad_0239
PFAM: periplasmic solute binding protein; KEGG: lxx:Lxx25040 ABC transporter, solute binding protein.
  
  
 0.646
Krad_3749
PFAM: periplasmic solute binding protein; KEGG: nca:Noca_1937 periplasmic solute binding protein.
  
  
 0.646
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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