STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0311PFAM: Roadblock/LC7 family protein. (148 aa)    
Predicted Functional Partners:
Krad_0313
PFAM: protein of unknown function ATP binding.
 
 
 0.986
Krad_0312
PFAM: protein of unknown function DUF742.
 
  
 0.961
Krad_3845
PFAM: protein of unknown function ATP binding; KEGG: sma:SAV2182 ATP/GTP-binding protein.
 
 
 0.944
Krad_3042
KEGG: ace:Acel_1323 small GTP-binding protein.
 
 
 0.930
Krad_0310
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein.
   
 0.911
Krad_3846
KEGG: rha:RHA1_ro02080 hypothetical protein.
 
  
 0.835
Krad_3848
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: nfa:nfa49650 putative histidine kinase.
   
 0.823
Krad_3510
PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family.
  
     0.566
Krad_4122
PFAM: ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV3185 magnesium or manganese-dependent protein phosphatase.
  
     0.483
Krad_0314
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein.
       0.455
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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