STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0343PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein. (339 aa)    
Predicted Functional Partners:
Krad_0342
PFAM: protein of unknown function DUF664.
 
     0.641
Krad_1880
KEGG: fal:FRAAL2881 hypothetical protein.
 
     0.629
Krad_3491
SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO6119 AraC family transcriptional regulator.
  
     0.496
Krad_0339
PFAM: diacylglycerol kinase catalytic region.
       0.459
Krad_0340
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
       0.459
Krad_0341
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein.
       0.459
Krad_0978
KEGG: sco:SCO3055 hypothetical protein.
 
    0.453
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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