STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0385PFAM: extracellular solute-binding protein family 1. (410 aa)    
Predicted Functional Partners:
Krad_0386
PFAM: binding-protein-dependent transport systems inner membrane component.
 0.995
Krad_0387
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.952
Krad_0389
PFAM: oxidoreductase domain protein; Oxidoreductase domain.
 
     0.874
Krad_0388
PFAM: protein of unknown function DUF1037.
 
     0.768
Krad_2165
KEGG: pac:PPA0399 sugar ABC transporter.
 
   0.647
Krad_0964
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_0686 putative ABC-type sugar transport systems, permease components.
 
 0.643
Krad_0384
PFAM: regulatory protein LacI.
 
     0.640
Krad_0963
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7505 putative integral membrane binding-protein-dependent transport protein.
 
 
 0.639
Krad_2167
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0400 putative transport system permease protein.
 
 
 0.614
Krad_0974
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0088 binding-protein-dependent transport systems inner membrane component.
 
 
 0.585
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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