STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0405Hypothetical protein. (242 aa)    
Predicted Functional Partners:
Krad_0406
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.988
Krad_1800
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_1676 sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.894
Krad_0407
Hypothetical protein.
 
     0.674
Krad_1364
KEGG: rha:RHA1_ro05945 hypothetical protein.
  
     0.568
Krad_1794
KEGG: aau:AAur_1865 hypothetical protein.
  
    0.555
Krad_2735
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: mva:Mvan_3507 putative transcriptional regulator, MerR family.
  
     0.544
Krad_0814
KEGG: art:Arth_3106 hypothetical protein.
  
     0.542
Krad_0648
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: tfu:Tfu_2696 geranylgeranyl reductase, plantal and prokaryotic.
   
  
 0.484
Krad_0521
PFAM: PRC-barrel domain protein; KEGG: aau:AAur_3970 putative conserved domain protein.
  
    0.481
Krad_0823
PFAM: PRC-barrel domain protein; KEGG: aau:AAur_3970 putative conserved domain protein.
  
    0.465
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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