STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0570PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: fra:Francci3_3941 NAD-dependent epimerase/dehydratase. (353 aa)    
Predicted Functional Partners:
Krad_0572
PFAM: oxidoreductase domain protein; SAF domain protein; KEGG: ava:Ava_1114 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
 
     0.958
Krad_0569
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: fal:FRAAL6241 glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
 
 0.954
Krad_0571
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.927
Krad_3285
PFAM: glycosyl transferase family 2; KEGG: fra:Francci3_1567 glycosyl transferase, family 2.
 
    0.697
Krad_0559
KEGG: fal:FRAAL1794 hypothetical protein; putative membrane protein; putative IMP dehydrogenase / GMP reductase domain.
 
    0.651
Krad_3680
PFAM: polysaccharide biosynthesis protein; KEGG: msm:MSMEG_5968 polysaccharide biosynthesis protein.
 
    0.532
Krad_3900
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: aau:AAur_3170 UDP-glucose 6-dehydrogenase.
  
 
 0.510
Krad_0568
PFAM: glycosyl transferase group 1; KEGG: sus:Acid_2118 glycosyl transferase, group 1.
 
    0.504
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.502
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.499
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.