STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0578KEGG: nca:Noca_0465 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Krad_1141
KEGG: art:Arth_2807 hypothetical protein.
  
     0.557
Krad_1311
KEGG: art:Arth_2719 hypothetical protein.
  
     0.556
Krad_3843
KEGG: sma:SAV5046 hypothetical protein.
  
     0.534
Krad_3338
KEGG: ace:Acel_0882 hypothetical protein.
  
     0.519
Krad_0577
Hypothetical protein.
       0.506
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.503
Krad_2993
KEGG: sma:SAV6870 hypothetical protein.
  
   
 0.499
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nfa:nfa4110 putative lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.497
Krad_3581
KEGG: fal:FRAAL6731 hypothetical protein.
  
     0.477
Krad_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.451
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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