STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0612Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sma:SAV4731 hypothetical protein. (66 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.592
Krad_0611
PFAM: histone deacetylase superfamily; KEGG: art:Arth_3345 histone deacetylase superfamily.
       0.592
Krad_0608
KEGG: sco:SCO3349 conserved hypothetical protein.
 
     0.558
Krad_0609
PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein.
       0.515
Krad_3347
KEGG: art:Arth_2470 hypothetical protein.
  
     0.485
Krad_3907
PFAM: GtrA family protein; KEGG: ace:Acel_0404 GtrA family protein.
  
    0.474
Krad_3881
PFAM: GtrA family protein; KEGG: nca:Noca_1597 GtrA family protein.
  
    0.428
Krad_0613
PFAM: Protein of unknown function DUF1713; KEGG: art:Arth_3300 protein of unknown function DUF1713.
       0.425
Krad_3231
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: art:Arth_1555 peptidoglycan-binding LysM.
 
     0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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