STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0624PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV3001 lyase. (139 aa)    
Predicted Functional Partners:
Krad_0623
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV3000 AraC-family transcriptional regulator.
 
    0.956
Krad_0625
Hypothetical protein.
       0.625
Krad_0622
PFAM: metallophosphoesterase; KEGG: art:Arth_3231 metallophosphoesterase.
  
    0.533
Krad_2725
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: nfa:nfa5050 putative transcriptional regulator.
 
    0.456
Krad_0978
KEGG: sco:SCO3055 hypothetical protein.
 
    0.438
Krad_3528
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sma:SAV4111 transcriptional regulator.
  
    0.417
Krad_1215
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rha:RHA1_ro00988 transcriptional regulator, AraC family.
 
    0.416
Krad_0628
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: lxx:Lxx01340 thiol:disulfide interchange protein.
  
    0.414
Krad_2450
TIGRFAM: peptidase S26B, signal peptidase; KEGG: cef:CE2634 putative signal peptidase I.
  
     0.414
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: fal:FRAAL0997 glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent.
       0.408
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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