STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0628PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: lxx:Lxx01340 thiol:disulfide interchange protein. (206 aa)    
Predicted Functional Partners:
Krad_0629
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: nca:Noca_0502 cytochrome c biogenesis protein, transmembrane region.
 
  
 0.924
Krad_0630
PFAM: ResB family protein; KEGG: aau:AAur_pTC10174 putative cytochrome c biogenesis membrane protein, ResB-like family.
 
  
 0.880
Krad_0631
PFAM: cytochrome c assembly protein; KEGG: aau:AAur_pTC10173 putative cytochrome biogenesis protein.
 
  
 0.873
Krad_0627
PFAM: Phosphoglycerate mutase; KEGG: nca:Noca_0500 phosphoglycerate mutase.
  
    0.829
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: fal:FRAAL0997 glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent.
       0.828
Krad_0632
KEGG: ace:Acel_0260 hypothetical protein.
       0.773
Krad_0625
Hypothetical protein.
       0.491
Krad_3251
PFAM: cytochrome c class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
 
 
 0.449
Krad_0126
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.417
Krad_0624
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV3001 lyase.
  
    0.414
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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