STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0666PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_1769 major facilitator superfamily MFS_1. (409 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
 
     0.825
Krad_0664
KEGG: aau:AAur_3002 hypothetical protein.
       0.781
Krad_0665
PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein.
       0.780
rpmG3
PFAM: ribosomal protein L33; KEGG: nca:Noca_0668 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.652
Krad_0801
PFAM: protein of unknown function DUF718; KEGG: nfa:nfa32910 hypothetical protein.
  
  
 0.513
Krad_1478
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1560 putative phosphatase.
    0.461
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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