STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0766PFAM: FAD linked oxidase domain protein; KEGG: fal:FRAAL3861 putative glycolate oxidoreductase (partial match). (441 aa)    
Predicted Functional Partners:
Krad_0865
PFAM: Catalase domain protein; KEGG: nfa:nfa55390 putative catalase; Belongs to the catalase family.
   
 0.917
Krad_2227
TIGRFAM: malate synthase A; PFAM: malate synthase; KEGG: tfu:Tfu_0819 malate synthase; Belongs to the malate synthase family.
  
 
 0.916
Krad_3579
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO4323 hydrolase.
    
 0.906
Krad_0201
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: pac:PPA0371 KHG/KDPG aldolase.
   
 
 0.905
Krad_2133
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: vfi:VF0090 2-dehydro-3-deoxyphosphogluconate aldolase.
   
 
 0.905
Krad_0657
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: art:Arth_2742 electron transfer flavoprotein beta-subunit.
 
 
 0.611
Krad_0658
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: art:Arth_2741 electron transfer flavoprotein, alpha subunit.
 
 
 0.602
argG
PFAM: argininosuccinate synthase; KEGG: sco:SCO7036 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
  
 0.580
Krad_0767
1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sma:SAV1520 putative 1-aminocyclopropane-1-carboxylate deaminase.
  
    0.572
Krad_2981
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nca:Noca_1980 FMN-dependent alpha-hydroxy acid dehydrogenase.
 0.514
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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