STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0801PFAM: protein of unknown function DUF718; KEGG: nfa:nfa32910 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Krad_1387
TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro04090 probable xylose isomerase.
 
  
 0.936
Krad_1385
PFAM: carbohydrate kinase FGGY; KEGG: sco:SCO0814 putative rhamnose kinase.
 
  
 0.931
Krad_1386
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_0590 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.860
Krad_0802
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro04084 transcriptional regulator, LacI family.
 
     0.742
Krad_2086
PFAM: carbohydrate kinase FGGY; KEGG: rxy:Rxyl_0833 carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
  
  
 0.645
Krad_3895
PFAM: carbohydrate kinase FGGY; KEGG: gka:GK1941 gluconokinase; Belongs to the FGGY kinase family.
  
  
 0.645
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ace:Acel_2065 xylulokinase.
  
  
 0.645
Krad_4056
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rha:RHA1_ro01353 probable acetolactate synthase; Belongs to the TPP enzyme family.
   
  
 0.642
Krad_0666
PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_1769 major facilitator superfamily MFS_1.
  
  
 0.513
Krad_3269
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pae:PA3749 probable major facilitator superfamily (MFS) transporter.
  
  
 0.513
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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