STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0807PFAM: periplasmic binding protein; KEGG: msm:MSMEG_0020 periplasmic binding protein. (343 aa)    
Predicted Functional Partners:
Krad_1239
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0336 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components.
 
 
 0.918
Krad_1241
PFAM: transport system permease protein; KEGG: sma:SAV6491 putative ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.907
Krad_1240
PFAM: transport system permease protein; KEGG: sma:SAV6492 putative ferrichrome transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.770
Krad_0442
PFAM: transport system permease protein; ABC-3 protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.758
Krad_0443
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.717
Krad_3705
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjk:jk1884 ABC-type enterochelin transport system ATPase component.
 
  
 0.597
Krad_4105
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: aau:AAur_3762 putative iron-chelator utilization protein.
 
  
 0.537
Krad_3703
PFAM: transport system permease protein; KEGG: cef:CE0882 putative iron ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.522
Krad_0806
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
       0.520
Krad_3654
PFAM: periplasmic binding protein; KEGG: rha:RHA1_ro06445 ABC Fe(3+) transporter, substrate binding component.
 
  
0.516
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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