STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0816KEGG: sma:SAV6381 endo-1,4-beta-xylanase. (318 aa)    
Predicted Functional Partners:
Krad_0078
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: sco:SCO2427 secreted arabinase.
 
     0.608
Krad_0815
Catalase; PFAM: manganese containing catalase; KEGG: nfa:nfa11820 putative manganese-containing catalase.
       0.563
Krad_4191
KEGG: nar:Saro_2411 twin-arginine translocation pathway signal.
 
   
 0.541
Krad_0962
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
 
  
 0.535
Krad_3567
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
 
  
 0.532
Krad_2532
PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.519
Krad_2548
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: ani:AN2356.2 hypothetical protein.
 
   
 0.514
Krad_0550
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: tfu:Tfu_2791 endo-1,4-beta-xylanase.
 
   
 0.508
Krad_0413
PFAM: glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.506
Krad_2520
PFAM: glycoside hydrolase family 35; KEGG: afm:Afu5g00670 glycosyl hydrolase family 35, putative.
 
  
 0.447
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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