STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0827KEGG: mkm:Mkms_2710 radical SAM domain protein. (359 aa)    
Predicted Functional Partners:
Krad_0826
KEGG: sco:SCO0844 DNA-binding protein.
 
     0.901
Krad_3428
PFAM: protein of unknown function DUF181; KEGG: mma:MM1458 hypothetical protein.
  
     0.668
Krad_1041
KEGG: mkm:Mkms_4521 conserved hypothetical protein.
  
     0.616
Krad_0270
KEGG: xcv:XCV3887 hypothetical protein.
 
     0.613
Krad_0828
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_1065 short-chain dehydrogenase/reductase SDR.
       0.560
Krad_0829
TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: art:Arth_0948 ATP-dependent DNA helicase, RecQ family.
       0.548
Krad_0382
Hypothetical protein.
  
     0.540
Krad_1794
KEGG: aau:AAur_1865 hypothetical protein.
  
     0.533
Krad_1364
KEGG: rha:RHA1_ro05945 hypothetical protein.
  
     0.495
Krad_0825
PFAM: cyclase/dehydrase; KEGG: fal:FRAAL6787 hypothetical protein.
       0.469
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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