STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0838PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: art:Arth_0040 putrescine oxidase. (463 aa)    
Predicted Functional Partners:
Krad_0839
PFAM: UspA domain protein; KEGG: aau:AAur_0044 putative universal stress family domain protein.
 
     0.932
Krad_0840
PFAM: amino acid permease-associated region; KEGG: art:Arth_0042 amino acid permease-associated region.
 
   
 0.931
Krad_1433
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rha:RHA1_ro03527 probable guanidinobutyrase; Belongs to the arginase family.
 
  
 0.927
Krad_3928
PFAM: aldehyde dehydrogenase; KEGG: nca:Noca_3529 betaine-aldehyde dehydrogenase.
    
 0.904
Krad_0841
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV2610 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.893
Krad_0837
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: art:Arth_0039 transcriptional regulator, TetR family.
 
     0.791
Krad_0611
PFAM: histone deacetylase superfamily; KEGG: art:Arth_3345 histone deacetylase superfamily.
   
 0.559
Krad_0836
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO1682 L-idonate 5-dehydrogenase.
  
    0.556
Krad_1013
Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase.
    
 0.540
Krad_0773
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro05388 amino acid transporter, APC family.
 
   
 0.481
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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