STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0860PFAM: beta-lactamase; KEGG: bja:blr5513 hypothetical protein. (457 aa)    
Predicted Functional Partners:
Krad_0861
KEGG: tfu:Tfu_0824 hypothetical protein.
       0.773
Krad_1258
PFAM: beta-lactamase; KEGG: rha:RHA1_ro05611 possible beta-lactamase.
  
   
 0.751
Krad_3827
PFAM: beta-lactamase; KEGG: sco:SCO7561 esterase.
  
     0.744
Krad_0862
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: fal:FRAAL6795 putative oxidoreductase.
       0.664
Krad_0863
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: fal:FRAAL6794 putative transcriptional regulatory protein.
       0.495
Krad_0864
Hypothetical protein.
       0.430
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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