STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0867PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_0234 oxidoreductase, short chain dehydrogenase/reductase family. (279 aa)    
Predicted Functional Partners:
Krad_0865
PFAM: Catalase domain protein; KEGG: nfa:nfa55390 putative catalase; Belongs to the catalase family.
  
 0.677
Krad_0868
PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein.
   
   0.665
Krad_1945
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sru:SRU_2781 oxidoreductase, putative.
  
    0.609
Krad_0866
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator; Belongs to the Fur family.
       0.608
Krad_3783
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rxy:Rxyl_3000 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.493
Krad_0229
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO0687 probable oxidoreductase.
  
     0.475
Krad_0782
KEGG: mkm:Mkms_1469 conserved hypothetical protein.
  
   0.463
Krad_3343
PFAM: Acyl transferase; KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase.
  
 
 0.448
Krad_0869
Hypothetical protein.
       0.441
Krad_0786
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL2503 putative short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.424
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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