STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0883Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nca:Noca_4251 ferric-uptake regulator; Belongs to the Fur family. (140 aa)    
Predicted Functional Partners:
Krad_0882
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
       0.823
Krad_0884
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: art:Arth_3008 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
       0.823
Krad_0881
Hypothetical protein.
       0.768
Krad_4279
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: fal:FRAAL3168 ferric uptake regulation protein (ferric uptake regulator); Belongs to the Fur family.
  
     0.738
Krad_3370
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro01222 Fe(3+) uptake regulation protein; Belongs to the Fur family.
  
   
 0.702
Krad_0866
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator; Belongs to the Fur family.
  
     0.696
Krad_0885
KEGG: ace:Acel_0065 AmfC protein.
       0.606
Krad_0880
KEGG: art:Arth_3011 hypothetical protein.
       0.578
Krad_2961
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin).
     
 0.518
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.502
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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