STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0961PFAM: luciferase family protein; KEGG: sma:SAV4255 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Krad_3851
TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: tfu:Tfu_2517 LPPG:Fo 2-phospho-L-lactate transferase.
 
   
 0.770
Krad_3409
PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase.
  
     0.767
Krad_3852
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: sco:SCO3037 putative oxidoreductase.
 
   
 0.766
Krad_0985
KEGG: fal:FRAAL1613 hypothetical protein.
  
   
 0.765
Krad_3725
PFAM: luciferase family protein; KEGG: sco:SCO5024 oxidoreductase.
  
     0.739
Krad_0960
KEGG: rha:RHA1_ro05523 hypothetical protein.
       0.718
Krad_4268
PFAM: luciferase family protein; KEGG: fal:FRAAL1418 conserved hypothetical protein; putative bacterial luciferase domain.
  
     0.693
Krad_3631
KEGG: nca:Noca_3295 hypothetical protein.
 
   
 0.689
Krad_2212
KEGG: rha:RHA1_ro00484 hypothetical protein.
  
   
 0.673
Krad_3632
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tfu:Tfu_2519 hypothetical protein.
 
  
 0.636
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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