STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0966PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: sco:SCO7506 hydrolase; Belongs to the glycosyl hydrolase 2 family. (621 aa)    
Predicted Functional Partners:
Krad_0965
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7503 putative extracellular solute-binding protein.
 
     0.619
Krad_3973
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.594
Krad_4148
PFAM: protein of unknown function DUF1680; KEGG: tma:TM0280 hypothetical protein.
 
     0.558
Krad_0967
PFAM: LGFP repeat protein; SCP-like extracellular; KEGG: rha:RHA1_ro04060 probable antigen 85 complex protein.
  
    0.494
Krad_3569
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: aba:Acid345_0902 alpha-L-fucosidase.
 
   
 0.493
Krad_1536
PFAM: PfkB domain protein; KEGG: tfu:Tfu_0696 putative 6-phosphofructokinase : 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.489
Krad_2158
PFAM: PfkB domain protein; KEGG: aau:AAur_1468 sugar kinase.
   
    0.489
Krad_0119
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: nfa:nfa34020 putative glycosyl hydrolase.
 
 0.488
Krad_0962
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
 
   
 0.479
Krad_0118
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: afm:Afu6g14610 alfa-L-rhamnosidase, putative.
 
 
 0.478
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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