STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0978KEGG: sco:SCO3055 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Krad_1490
PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein.
 
     0.716
Krad_1218
PFAM: protein of unknown function DUF664; KEGG: sma:SAV3241 hypothetical protein.
 
     0.707
Krad_2348
KEGG: sma:SAV3241 hypothetical protein.
 
     0.588
Krad_2041
KEGG: mkm:Mkms_4094 conserved hypothetical protein.
  
     0.575
Krad_0979
KEGG: fra:Francci3_2143 hypothetical protein.
 
     0.538
Krad_0343
PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein.
 
    0.453
Krad_2627
Helix-turn-helix type 11 domain protein; PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sco:SCO7527 DeoR-family transcriptional regulator.
 
    0.449
Krad_0624
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV3001 lyase.
 
    0.438
Krad_3524
KEGG: art:Arth_2402 hypothetical protein.
  
     0.434
Krad_0623
PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV3000 AraC-family transcriptional regulator.
  
     0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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