STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0981PFAM: aminotransferase class V; KEGG: mva:Mvan_5482 aminotransferase, class V. (369 aa)    
Predicted Functional Partners:
Krad_3483
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: mva:Mvan_2737 SUF system FeS assembly protein, NifU family.
  
 
 0.886
Krad_2916
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: art:Arth_2104 FeS assembly protein SufD.
 
 
 0.716
Krad_2915
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1922 putative ABC transporter ATP-binding subunit.
  
  
 0.679
Krad_2917
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sco:SCO1925 hypothetical protein.
  
 
 0.672
Krad_3080
PFAM: Fe-S metabolism associated SufE; KEGG: art:Arth_1665 Fe-S metabolism associated SufE.
  
 
 0.635
Krad_0980
KEGG: nca:Noca_0934 hypothetical protein.
       0.532
Krad_1174
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3798 endonuclease/exonuclease/phosphatase.
  
 
   0.511
Krad_1483
Hypothetical protein; KEGG: mkm:Mkms_0181 conserved hypothetical protein.
  
     0.473
Krad_1438
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_1916 hypothetical protein.
    
   0.441
Krad_3237
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ace:Acel_0980 endonuclease/exonuclease/phosphatase.
    
   0.441
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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