STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0982PFAM: iron dependent repressor; FeoA family protein; KEGG: rha:RHA1_ro06652 probable Fe(2+)-dependent transcriptional regulator. (251 aa)    
Predicted Functional Partners:
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.768
Krad_0984
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: aau:AAur_0083 oxidoreductase family, NAD-binding Rossmann fold domain protein.
   
   0.761
Krad_0985
KEGG: fal:FRAAL1613 hypothetical protein.
       0.726
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.579
Krad_3230
Hypothetical protein; KEGG: sco:SCO2105 transcriptional regulatory protein.
   
    0.573
Krad_0079
PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_1967 ThiJ/PfpI domain protein.
  
    0.571
Krad_3774
PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.568
Krad_4012
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
  
 
 0.517
Krad_0668
PFAM: regulatory protein GntR HTH; KEGG: art:Arth_3017 transcriptional regulator, GntR family.
  
    0.461
Krad_3901
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: msm:MSMEG_6421 transcriptional regulator.
   
    0.452
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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