STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0998PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa24230 putative oxidoreductase. (460 aa)    
Predicted Functional Partners:
Krad_2961
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin).
  
  
 0.709
Krad_0995
Hypothetical protein.
       0.648
Krad_0996
Hypothetical protein.
       0.648
Krad_0997
Hypothetical protein.
       0.648
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.634
Krad_3252
PFAM: Rieske [2Fe-2S] domain protein; KEGG: aau:AAur_2209 ubiquinol-cytochrome c reductase iron-sulfur subunit.
  
  
 0.589
Krad_1228
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase central region; KEGG: art:Arth_2645 2-oxoglutarate dehydrogenase, E1 subunit.
  
  
 0.535
Krad_0999
TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: rha:RHA1_ro05971 DNA-3-methyladenine glycosylase I.
       0.520
Krad_1641
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: tfu:Tfu_0637 cytochrome bd ubiquinol oxidase, subunit II.
     
 0.508
Krad_3250
PFAM: cytochrome c oxidase subunit III; KEGG: aau:AAur_2207 cytochrome c oxidase subunit III.
  
  
 0.505
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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