STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1027PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative. (179 aa)    
Predicted Functional Partners:
Krad_2696
PFAM: carbonic anhydrase; KEGG: gvi:glr0945 carbonate dehydratase.
    
 0.943
Krad_2861
Hypothetical protein; KEGG: mtp:Mthe_0684 carbonate dehydratase.
    
 
 0.684
Krad_1605
PFAM: formate/nitrite transporter; KEGG: bsu:BG12296 putative formate-nitrite transporter.
 
    0.672
Krad_3500
KEGG: mva:Mvan_4123 formate/nitrite family of transporters-like protein.
  
    0.610
Krad_1028
PFAM: Phosphoglycerate mutase; KEGG: sma:SAV1772 mutase.
  
    0.604
Krad_3463
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mkm:Mkms_0905 acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
    
 0.565
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.483
Krad_3306
KEGG: sma:SAV5809 hypothetical protein.
   
    0.412
Krad_1029
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sma:SAV2747 phosphodiesterase.
       0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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