STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1032N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: msm:MSMEG_3787 D-aminoacylase. (545 aa)    
Predicted Functional Partners:
Krad_1031
KEGG: rha:RHA1_ro02460 possible D-amino acid deaminase.
 
   
 0.974
Krad_1030
PFAM: Endoribonuclease L-PSP; KEGG: lxx:Lxx00630 protein synthesis inhibitor.
 
     0.699
Krad_1033
PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL1119 putative PadR-like family transcriptional regulator.
       0.634
Krad_1544
TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cef:CE0106 hypothetical protein; Belongs to the peptidase M20A family.
 
     0.525
Krad_3528
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sma:SAV4111 transcriptional regulator.
  
   
 0.427
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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