STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1036KEGG: pac:PPA0050 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Krad_1035
PFAM: DNA/RNA non-specific endonuclease; KEGG: aau:AAur_0992 putative DNA/RNA non-specific endonuclease family protein.
       0.671
Krad_0219
PFAM: glycoside hydrolase 15-related; KEGG: rxy:Rxyl_2413 glycoside hydrolase 15-related.
  
     0.603
Krad_1210
PFAM: DoxX family protein; KEGG: rha:RHA1_ro00971 hypothetical protein.
  
     0.489
Krad_1141
KEGG: art:Arth_2807 hypothetical protein.
  
     0.483
Krad_0548
PFAM: membrane-flanked domain; KEGG: aau:AAur_0145 putative bacterial membrane flanked domain protein.
  
     0.448
Krad_1034
Hypothetical protein.
       0.440
Krad_3105
KEGG: aau:AAur_0453 hypothetical protein.
  
     0.421
Krad_0753
KEGG: fra:Francci3_4327 hypothetical protein.
  
     0.412
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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