STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1063PFAM: glycoside hydrolase family 10; glycoside hydrolase family 5; KEGG: bch:Bcen2424_4202 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (398 aa)    
Predicted Functional Partners:
Krad_1060
Hypothetical protein; KEGG: mma:MM1643 oligosaccharide repeat unit transporter.
 
     0.759
Krad_1064
PFAM: glycosyl transferase group 1; KEGG: pab:PAB0973 LPS biosynthesis RfbU related protein.
       0.678
Krad_1061
Hypothetical protein.
       0.640
Krad_1062
PFAM: glycosyl transferase group 1; KEGG: tbd:Tbd_1784 probable glycosyltransferase.
       0.631
Krad_2158
PFAM: PfkB domain protein; KEGG: aau:AAur_1468 sugar kinase.
 
  
 0.583
Krad_1536
PFAM: PfkB domain protein; KEGG: tfu:Tfu_0696 putative 6-phosphofructokinase : 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.571
Krad_1059
Membrane protein-like; KEGG: mth:MTH339 hypothetical protein.
       0.428
Krad_3528
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sma:SAV4111 transcriptional regulator.
  
     0.418
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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