STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1077PFAM: protein of unknown function DUF419; KEGG: nfa:nfa3700 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Krad_1078
KEGG: sma:SAV1904 hypothetical protein.
       0.563
Krad_1079
PFAM: Uracil-DNA glycosylase superfamily; KEGG: nca:Noca_0935 uracil-DNA glycosylase superfamily.
       0.563
Krad_2257
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein.
 
     0.530
Krad_2373
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein.
 
     0.529
Krad_2686
PFAM: regulatory protein TetR; KEGG: fal:FRAAL4751 putative TetR family transcriptional regulator.
  
     0.522
Krad_3491
SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO6119 AraC family transcriptional regulator.
  
     0.472
Krad_1797
Hypothetical protein; KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein.
  
     0.453
Krad_0918
PFAM: sodium/hydrogen exchanger; KEGG: sma:SAV7389 putative sodium/proton antiporter.
  
     0.425
Krad_2826
PFAM: DGPFAETKE family protein; KEGG: sit:TM1040_3855 hypothetical protein.
  
     0.418
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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