STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1079PFAM: Uracil-DNA glycosylase superfamily; KEGG: nca:Noca_0935 uracil-DNA glycosylase superfamily. (291 aa)    
Predicted Functional Partners:
Krad_1521
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ace:Acel_0118 phage SPO1 DNA polymerase-related protein.
     
  0.900
Krad_1078
KEGG: sma:SAV1904 hypothetical protein.
  
    0.806
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
    
 0.590
Krad_1077
PFAM: protein of unknown function DUF419; KEGG: nfa:nfa3700 hypothetical protein.
       0.563
Krad_1080
PFAM: protein of unknown function DUF1112; KEGG: sco:SCO3083 integral membrane protein.
       0.492
Krad_0599
HhH-GPD family protein; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: sma:SAV4707 putative adenine glycosylase.
  
   
 0.455
Krad_1081
Hypothetical protein.
       0.430
Krad_1082
TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: msm:MSMEG_5270 cystathionine beta-synthase.
  
  
 0.420
Krad_4338
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: aau:AAur_4164 single-strand binding protein.
   
   0.410
Krad_0731
PFAM: peptidase M22 glycoprotease; KEGG: sma:SAV4972 hypothetical protein.
  
    0.400
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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