STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1117Protein involved in cellulose biosynthesis (CelD)-like; KEGG: ade:Adeh_1016 glycosyl transferase, group 1. (477 aa)    
Predicted Functional Partners:
Krad_1113
PFAM: extracellular solute-binding protein family 1; KEGG: mva:Mvan_2544 extracellular solute-binding protein, family 1.
       0.444
Krad_1114
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_2543 binding-protein-dependent transport systems inner membrane component.
       0.444
Krad_1115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_2542 binding-protein-dependent transport systems inner membrane component.
       0.444
Krad_1116
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mva:Mvan_2541 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
       0.444
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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