STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1156PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ace:Acel_2090 type II secretion system protein E. (591 aa)    
Predicted Functional Partners:
Krad_3026
PFAM: type II secretion system protein; KEGG: ace:Acel_1320 type II secretion system protein.
 
 0.994
Krad_3025
KEGG: ace:Acel_1318 secretory protein.
 
 
 0.920
Krad_3019
TIGRFAM: type IV pilus assembly protein PilM; KEGG: ace:Acel_1313 type IV pilus assembly protein PilM.
 
 
 0.917
Krad_3020
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ace:Acel_1314 peptidase A24A domain protein.
 
 
 0.916
Krad_3018
PFAM: Fimbrial assembly family protein; KEGG: ace:Acel_1312 fimbrial assembly family protein.
  
 
 0.817
Krad_3024
KEGG: ace:Acel_1318 secretory protein.
 
 
 0.788
Krad_1157
PFAM: protein of unknown function DUF1003; KEGG: aau:AAur_2776 putative protein of unknown function (DUF1003).
       0.781
Krad_1158
MgtE intracellular region; PFAM: CBS domain containing protein; MgtE intracellular region; KEGG: ace:Acel_1818 MgtE intracellular region.
       0.781
Krad_3434
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
  
  
 0.730
Krad_3012
KEGG: nca:Noca_1121 hypothetical protein.
  
 
 0.717
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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