STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1167KEGG: art:Arth_2776 hypothetical protein. (74 aa)    
Predicted Functional Partners:
Krad_1168
KEGG: tfu:Tfu_0618 hypothetical protein.
  
    0.647
Krad_0005
PFAM: protein of unknown function DUF721; KEGG: art:Arth_0005 protein of unknown function DUF721.
  
     0.637
whiB-8
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.632
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.631
Krad_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.617
Krad_1172
PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_0524 putative DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.617
Krad_1171
PFAM: UvrD/REP helicase; KEGG: art:Arth_2757 UvrD/REP helicase.
 
     0.577
Krad_4042
KEGG: art:Arth_3409 hypothetical protein.
  
     0.554
Krad_3844
KEGG: ace:Acel_0462 hypothetical protein.
  
     0.540
Krad_3422
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: lxx:Lxx14720 DNA polymerase III, delta subunit.
  
     0.539
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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