STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1177KEGG: sco:SCO1975 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Krad_1178
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sco:SCO5187 glutaredoxin-like protein.
  
    0.785
Krad_2931
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: art:Arth_2087 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.625
Krad_1179
PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 putative ATP-dependent DNA helicase (UvrD/REP).
  
    0.547
Krad_3582
KEGG: sco:SCO4331 hypothetical protein.
  
     0.522
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.509
Krad_3414
KEGG: sco:SCO6046 hypothetical protein.
  
 
   0.501
Krad_1013
Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase.
   
 0.500
Krad_2299
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO7297 two-component sensor histidine kinase.
  
 
 0.476
Krad_0458
PFAM: cyclic nucleotide-binding; ATP-binding region ATPase domain protein.
  
 
 0.474
Krad_2523
KEGG: mva:Mvan_4235 putative ferredoxin.
  
     0.456
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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