STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1213TIGRFAM: Anti-sigma factor RshA; KEGG: tfu:Tfu_0549 anti-sigma factor. (90 aa)    
Predicted Functional Partners:
Krad_1212
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5216 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.974
Krad_0464
Hypothetical protein.
  
     0.706
Krad_1211
PFAM: protein of unknown function DUF159; KEGG: sma:SAV3040 hypothetical protein; Belongs to the SOS response-associated peptidase family.
       0.702
Krad_4496
KEGG: sma:SAV4300 hypothetical protein.
 
    0.666
Krad_1549
KEGG: sco:SCO5843 hypothetical protein.
  
     0.661
Krad_2974
KEGG: tfu:Tfu_1082 hypothetical protein.
  
     0.649
Krad_3061
KEGG: sco:SCO1524 hypothetical protein.
  
     0.629
Krad_1210
PFAM: DoxX family protein; KEGG: rha:RHA1_ro00971 hypothetical protein.
     
 0.627
Krad_0740
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tfu:Tfu_2597 putative RNA polymerase ECF-subfamily sigma factor.
 
 
 0.610
Krad_3230
Hypothetical protein; KEGG: sco:SCO2105 transcriptional regulatory protein.
  
     0.568
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.