STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1214TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: ace:Acel_0550 twitching motility protein. (396 aa)    
Predicted Functional Partners:
Krad_3026
PFAM: type II secretion system protein; KEGG: ace:Acel_1320 type II secretion system protein.
  
 0.813
Krad_3020
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ace:Acel_1314 peptidase A24A domain protein.
 
   
 0.809
Krad_3019
TIGRFAM: type IV pilus assembly protein PilM; KEGG: ace:Acel_1313 type IV pilus assembly protein PilM.
 
   
 0.805
Krad_3025
KEGG: ace:Acel_1318 secretory protein.
 
   
 0.776
Krad_3024
KEGG: ace:Acel_1318 secretory protein.
 
   
 0.541
Krad_1213
TIGRFAM: Anti-sigma factor RshA; KEGG: tfu:Tfu_0549 anti-sigma factor.
       0.482
Krad_1216
PFAM: ribonuclease BN; KEGG: fal:FRAAL1679 putative glycosyl transferase.
       0.469
Krad_3434
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
     
 0.468
Krad_1212
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sco:SCO5216 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.466
Krad_1215
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rha:RHA1_ro00988 transcriptional regulator, AraC family.
       0.444
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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