Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1237KEGG: sma:SAV2410 hypothetical protein. (291 aa)    
Predicted Functional Partners:
Krad_1236
KEGG: sma:SAV4165 hypothetical protein.
  
    0.546
Krad_0960
KEGG: rha:RHA1_ro05523 hypothetical protein.
  
     0.460
Krad_3755
Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family.
 
 
   0.453
Krad_2082
PFAM: regulatory protein TetR; KEGG: sma:SAV1468 TetR-family transcriptional regulator.
  
     0.416
Krad_0121
Putative PAS/PAC sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
  
     0.414
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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