STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1258PFAM: beta-lactamase; KEGG: rha:RHA1_ro05611 possible beta-lactamase. (377 aa)    
Predicted Functional Partners:
Krad_2625
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: nfa:nfa13570 putative peptidase.
  
   
 0.762
Krad_0860
PFAM: beta-lactamase; KEGG: bja:blr5513 hypothetical protein.
  
   
 0.751
Krad_0368
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase.
  
   
 0.708
Krad_3827
PFAM: beta-lactamase; KEGG: sco:SCO7561 esterase.
  
   
 0.677
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.664
Krad_1260
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: ace:Acel_0643 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.504
Krad_1261
PFAM: glycosyl transferase family 4; KEGG: ace:Acel_0644 glycosyl transferase, family 4.
       0.504
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.452
Krad_1284
PFAM: beta-lactamase; KEGG: pac:PPA1511 putative 6-aminohexanoate-dimer hydrolase.
  
     0.448
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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