STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1285PFAM: phenylalanine/histidine ammonia-lyase; KEGG: dra:DRA0147 histidine ammonia-lyase. (475 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.994
hutI
TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: art:Arth_1313 imidazolonepropionase.
 
  
 0.930
Krad_1289
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sma:SAV3504 histidine ammonia-lyase.
  
  
 
0.929
Krad_4453
TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; KEGG: nfa:nfa12280 putative histidine ammonia-lyase.
  
  
 
0.927
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.910
Krad_1284
PFAM: beta-lactamase; KEGG: pac:PPA1511 putative 6-aminohexanoate-dimer hydrolase.
       0.773
Krad_1397
PFAM: amidohydrolase; KEGG: sma:SAV6403 hypothetical protein.
  
  
 0.560
Krad_3656
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE0530 imidazolonepropionase and related amidohydrolase.
  
  
 0.560
Krad_1433
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rha:RHA1_ro03527 probable guanidinobutyrase; Belongs to the arginase family.
  
  
 0.503
Krad_1283
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa24920 putative ABC transporter ATP-binding protein.
       0.493
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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