STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1314KEGG: gvi:gll2146 hypothetical protein. (415 aa)    
Predicted Functional Partners:
Krad_2879
PFAM: phytase; KEGG: gvi:gll2099 probable phytase.
 
   
 0.875
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.537
Krad_0293
Lipoprotein; KEGG: sco:SCO2764 lipoprotein.
 
    
0.500
Krad_2031
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV437 magnesium or manganese-dependent protein phosphatase.
  
     0.476
Krad_2776
PFAM: 5'-Nucleotidase domain protein; KEGG: cyb:CYB_0274 5'-nucleotidase domain/Ser/Thr protein phosphatase family protein; Belongs to the 5'-nucleotidase family.
 
    
 0.465
Krad_1581
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sco:SCO4120 hypothetical protein.
  
     0.450
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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