STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1461Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: msm:MSMEG_3606 transcriptional regulator. (318 aa)    
Predicted Functional Partners:
Krad_0303
PFAM: extracellular solute-binding protein family 1.
 
     0.639
Krad_0301
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6355 putative integral membrane sugar transport protein.
 
     0.524
Krad_1460
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3607 short chain dehydrogenase.
       0.511
Krad_0302
PFAM: binding-protein-dependent transport systems inner membrane component.
 
     0.491
Krad_1455
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_3605 sorbitol dehydrogenase.
 
     0.444
Krad_1459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_3602 ribose transport ATP-binding protein RbsA.
  
  
 0.441
Krad_1458
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msm:MSMEG_3601 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
  
 0.437
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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